PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G026100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 287aa    MW: 31065.2 Da    PI: 5.1404
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G026100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-1488147155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++ k++g+++A+++d  s+  g  ++ k+++lg++ t+e Aa+a++ a++k++g
  Brast03G026100.1.p  88 SRYHGVTRLKWSGKYEAHLWDnTSQvEGrkRKgKHVYLGSYVTEENAARAHDLAALKYWG 147
                         79*******************666696675336************************987 PP

2AP2483.2e-15192245155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++k +g+W A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  Brast03G026100.1.p 192 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIELRG 245
                         67*****999.9******99953323..36**********99*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-1488159No hitNo description
PfamPF008479.3E-1288147IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1488157IPR016177DNA-binding domain
SMARTSM003809.2E-2089163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1389157IPR001471AP2/ERF domain
PROSITE profilePS5103217.37289157IPR001471AP2/ERF domain
PfamPF008471.0E-10192245IPR001471AP2/ERF domain
CDDcd000185.38E-21192255No hitNo description
SuperFamilySSF541711.96E-17192255IPR016177DNA-binding domain
SMARTSM003801.3E-27193259IPR001471AP2/ERF domain
PROSITE profilePS5103218.465193253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-19193253IPR001471AP2/ERF domain
PRINTSPR003674.6E-8194205IPR001471AP2/ERF domain
PRINTSPR003674.6E-8235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPAVHPNS PDPTATAPAP PPSQEDPPAS ADAAATEGGA GGEIAALDEQ LAVAVDGSSG  60
GGEETKAEPS GGKLVAETMR KYAAPRSSRY HGVTRLKWSG KYEAHLWDNT SQVEGRKRKG  120
KHVYLGSYVT EENAARAHDL AALKYWGVSQ HTKLNFTISD YEKEIEIMKS MNQDEFVAYI  180
RRQSSCFSRG TSSYRGVTRR KDGKWQARIG RIGESRDTKD IYLGTFETEV EAAEAYDLAA  240
IELRGVHAVT NFDISNYSEE GLKKLEGSSE ETNLEGQSEV TELAGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089260.0BT008926.1 Triticum aestivum clone wde1f.pk001.h1:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234345.11e-174PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ1PFE12e-71AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP73e-71PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLI1I1771e-174I1I177_BRADI; Uncharacterized protein
STRINGBRADI3G15880.11e-174(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-72AP2 family protein